Grants and Awards

Biotech Login

Tag: BIO212AA subcloning pUC19 LacZ

kramer
Jenn's email question about subcloning
2009.04.06 09:00:20

This web site is seriously weak...doesn't work with IE7...only Mozilla.  Here is a cut-and-paste of an email conversation with Jenn about the subcloning exercise for BIO212AA S'09.

 

body {margin:8px} .tr-field {font:normal x-small arial}

Jen,
 
Sorry so late in replying.  Daniel was walking through the same logic today with me, so I'll tell you the conclusions we came to...
 
The pUC19 MCS is in the LacZ operon, so any changes there will make the gene inoperative.  The cut is 23 nucleotides long so one would hope that if you stuck 23 "new nucleotides" in...well, at least there wouldn't be a frame shift mutation.  I don't know that it's reasonable to expect proper expression of LacZ though...so it's anyone's guess whether blue-white selection will work any more.  (I think not.)
 
Re: polymerase synthesizing the genes...no, I don't think it understands content, but if you have nonsense nucleotide sequences, the synthesized protein won't work (reference blue-white selection discussion above).
 
Soooo...yeh.  I think you're right.  If you successfully clone something else in there, LacZ won't work anymore.
 
I'm going to cut-and-paste this discussion into the bio-blog-o-sphere (has the language really denegrated to THAT?)
 
Peace,
_
C

On Fri, Apr 3, 2009 at 1:06 PM, jennifer kistner < This e-mail address is being protected from spambots. You need JavaScript enabled to view it > wrote:
 hi

I have a few questions:  (wasnt able to post on blog)


If you remove that protion of the MCS and ligate it back together (no insertion) the Lac z will not be functional, right?

When synthesis occurs of the gene, will polymerase keep synthesizing as long as it makes sense. Does polymerase recognize the misisng base pairs?

so essentially I should replace the amino acids with different base pairs, but specific amino acids encode for specific genes.
Thats why you insert different genes to make a subclone hence clone successful Lac z doesnt work.

Any advice appreciated
 
Jenn kistner 
 

 



Tags: BIO212AA subcloning pUC19 LacZ

Comments 1 | Hits: 110 | Read more...